Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LX96_ORYLAUncharacterized protein. (130 aa)    
Predicted Functional Partners:
CCDC112
Coiled-coil domain containing 112.
    
 
 0.927
mospd2
Motile sperm domain containing 2.
      
 0.715
c19h10orf88
Si:rp71-19m20.1.
      
 0.710
maats1
MYCBP-associated, testis expressed 1.
    
 
 0.704
cep104
Centrosomal protein 104.
      
 0.691
LOC101174833
Nucleolar protein 4-like a.
    
   0.675
ENSORLP00000031689
Uncharacterized protein.
    
   0.675
LOC101169180
Nucleolar protein 4-like b.
    
   0.675
utp3
UTP3 small subunit processome component.
      
 0.656
ccdc6
Coiled-coil domain containing 6a.
      
 0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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