STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173589Si:rp71-68n21.9. (689 aa)    
Predicted Functional Partners:
LOC101159396
Kelch-like ECH-associated protein 1a.
  
 
0.934
keap1
Kelch-like ECH-associated protein 1b.
  
 
0.933
LOC101161977
Rho related BTB domain containing 4.
    
  0.908
rhobtb2
Rho related BTB domain containing 2a.
    
  0.908
klhl13
Kelch-like family member 13.
  
  
 
0.902
klhl22
Kelch-like family member 22.
  
 
0.790
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.784
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.784
klhl42
Kelch-like family, member 42.
  
 
0.678
kctd2
Potassium channel tetramerization domain containing 2.
   
 0.609
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.