Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
irf2Interferon regulatory factor. (320 aa)    
Predicted Functional Partners:
LOC101163430
Interferon regulatory factor.
   
 0.908
LOC101171800
IRF-2BP1_2 domain-containing protein.
    
 
 0.810
ENSORLP00000033146
Interferon regulatory factor 2 binding protein 1.
    
 
 0.810
irf2bp2
Interferon regulatory factor 2 binding protein 2.
    
 
 0.810
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 
 0.761
rfc3
Replication factor C (activator 1) 3.
   
 
 0.732
LOC111948510
Interferon regulatory factor 2 binding protein 1.
    
 
 0.699
sprtn
SprT-like N-terminal domain.
    
 
 0.636
c-fos
BZIP domain-containing protein.
    
 0.604
LOC101157738
Interleukin 1 receptor type 2.
    
 
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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