STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arrdc2Arrestin domain containing 2. (408 aa)    
Predicted Functional Partners:
txn
Thioredoxin; Belongs to the thioredoxin family.
    
 0.703
bysl
Bystin-like.
      
 0.668
sspn
Sarcospan (Kras oncogene-associated gene).
   
  
 0.656
YES1
Tyrosine-protein kinase.
    
 
 0.613
vps26b
VPS26, retromer complex component B.
      
 0.607
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.578
arrb1
Arrestin, beta 1.
    
 
 0.538
SEMA4D
Semaphorin 4D; Belongs to the semaphorin family.
      
 0.522
LOC101162124
Plexin b1a.
      
 0.508
LOC101159664
Plexin b1b.
      
 0.508
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.