STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arrdc2Arrestin domain containing 2. (408 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
      
 0.715
sspn
Sarcospan (Kras oncogene-associated gene).
   
  
 0.706
YES1
Tyrosine-protein kinase.
    
 
 0.694
rasl11b
RAS-like, family 11, member B.
    
 
 0.660
vps26b
VPS26, retromer complex component B.
      
 0.657
txn
Thioredoxin; Belongs to the thioredoxin family.
    
 0.635
ppm1f
Protein phosphatase, Mg2+/Mn2+ dependent, 1F.
    
 
 0.614
LOC101158451
DiGeorge syndrome critical region gene 6.
      
 0.580
ddx51
DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.
    
 
 0.575
H2L4N6_ORYLA
Uncharacterized protein.
    
 0.571
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.