STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164249Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (406 aa)    
Predicted Functional Partners:
zdhhc21
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
     
 0.721
raver2
Ribonucleoprotein, PTB-binding 2.
      
 0.597
lypla2
Lysophospholipase 2.
      
 0.521
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
      
 0.512
ubtd1
Ubiquitin domain containing 1b.
      
 0.510
LOC101167980
TGF_BETA_2 domain-containing protein.
      
 0.508
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
      
 0.508
ckap4
Uncharacterized protein.
     
 0.494
zdhhc24
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
     
 0.469
lzic
Leucine zipper and CTNNBIP1 domain containing.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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