Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mtfr1Mitochondrial fission regulator 1. (313 aa)    
Predicted Functional Partners:
CPQ
Carboxypeptidase Q.
     
 0.778
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
   
    0.765
epha8
Uncharacterized protein.
    
 0.746
ghrh
Growth hormone releasing hormone.
   
    0.697
nrde2
NRDE-2, necessary for RNA interference, domain containing.
    
 
 0.689
sfxn4
Sideroflexin 4.
      
 0.669
LOC100049402
Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.
   
    0.645
LOC101171460
Uncharacterized protein.
   
    0.645
mapre1
Microtubule-associated protein, RP/EB family, member 1b.
   
   0.609
chad
Chondroadherin.
   
 
  0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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