STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105358629TLDc domain-containing protein. (445 aa)    
Predicted Functional Partners:
rsad2
Radical S-adenosyl methionine domain containing 2.
   
  
 0.876
ubxn7
UBX domain protein 7.
    
   0.824
mrpl27
Mitochondrial ribosomal protein L27.
   
 
 0.651
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.646
mrpl23
Mitochondrial ribosomal protein L23.
   
 
 0.646
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.641
mrpl22
Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.639
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.631
mrpl33
Mitochondrial ribosomal protein L33.
   
 
 0.630
mrps10
Mitochondrial ribosomal protein S10.
   
 
 0.616
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.