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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pla1aPhospholipase A1 member A. (496 aa)    
Predicted Functional Partners:
ptdss2
Phosphatidylserine synthase 2.
     
 0.931
pisd
Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.
   
 0.928
LOC101161577
Phosphatidylserine synthase 1a.
     
 0.915
PTDSS1
Phosphatidylserine synthase 1.
     
 0.915
mboat1
Membrane bound O-acyltransferase domain containing 1; Belongs to the membrane-bound acyltransferase family.
    
 0.911
lpcat3
Lysophosphatidylcholine acyltransferase 3; Belongs to the membrane-bound acyltransferase family.
     
 0.906
mboat2
Membrane bound O-acyltransferase domain containing 2a; Belongs to the membrane-bound acyltransferase family.
     
 0.902
maats1
MYCBP-associated, testis expressed 1.
    
 0.450
ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 
 0.421
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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