LOC101158107 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101158107

Rho guanine nucleotide exchange factor (GEF) 3, like. (495 aa)

Predicted Functional Partners:

rrad

0.839

akap12

0.801

LOC101156944

0.732

LOC101155194

0.514

RND1

0.514

RHOB

0.514

LOC101173444

0.514

LOC101158607

0.514

LOC101168783

0.514

LOC101160539

0.514

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155194	LOC101158107	ENSORLP00000010127	ENSORLP00000010806	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.514
LOC101156944	LOC101158107	ENSORLP00000037151	ENSORLP00000010806	RAS protein activator like 3.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.732
LOC101156944	akap12	ENSORLP00000037151	ENSORLP00000037744	RAS protein activator like 3.	A kinase (PRKA) anchor protein 12b.	0.586
LOC101156944	rrad	ENSORLP00000037151	ENSORLP00000033740	RAS protein activator like 3.	Ras-related associated with diabetes.	0.719
LOC101158107	LOC101155194	ENSORLP00000010806	ENSORLP00000010127	Rho guanine nucleotide exchange factor (GEF) 3, like.	Uncharacterized protein.	0.514
LOC101158107	LOC101156944	ENSORLP00000010806	ENSORLP00000037151	Rho guanine nucleotide exchange factor (GEF) 3, like.	RAS protein activator like 3.	0.732
LOC101158107	LOC101158607	ENSORLP00000010806	ENSORLP00000029349	Rho guanine nucleotide exchange factor (GEF) 3, like.	Uncharacterized protein.	0.514
LOC101158107	LOC101160539	ENSORLP00000010806	ENSORLP00000034593	Rho guanine nucleotide exchange factor (GEF) 3, like.	Uncharacterized protein.	0.514
LOC101158107	LOC101168783	ENSORLP00000010806	ENSORLP00000031423	Rho guanine nucleotide exchange factor (GEF) 3, like.	Rho family GTPase 1b.	0.514
LOC101158107	LOC101173444	ENSORLP00000010806	ENSORLP00000023516	Rho guanine nucleotide exchange factor (GEF) 3, like.	Uncharacterized protein.	0.514
LOC101158107	RHOB	ENSORLP00000010806	ENSORLP00000015802	Rho guanine nucleotide exchange factor (GEF) 3, like.	Ras homolog family member B.	0.514
LOC101158107	RND1	ENSORLP00000010806	ENSORLP00000015416	Rho guanine nucleotide exchange factor (GEF) 3, like.	Rho family GTPase 1.	0.514
LOC101158107	akap12	ENSORLP00000010806	ENSORLP00000037744	Rho guanine nucleotide exchange factor (GEF) 3, like.	A kinase (PRKA) anchor protein 12b.	0.801
LOC101158107	rrad	ENSORLP00000010806	ENSORLP00000033740	Rho guanine nucleotide exchange factor (GEF) 3, like.	Ras-related associated with diabetes.	0.839
LOC101158607	LOC101158107	ENSORLP00000029349	ENSORLP00000010806	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.514
LOC101160539	LOC101158107	ENSORLP00000034593	ENSORLP00000010806	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.514
LOC101168783	LOC101158107	ENSORLP00000031423	ENSORLP00000010806	Rho family GTPase 1b.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.514
LOC101173444	LOC101158107	ENSORLP00000023516	ENSORLP00000010806	Uncharacterized protein.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.514
RHOB	LOC101158107	ENSORLP00000015802	ENSORLP00000010806	Ras homolog family member B.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.514
RND1	LOC101158107	ENSORLP00000015416	ENSORLP00000010806	Rho family GTPase 1.	Rho guanine nucleotide exchange factor (GEF) 3, like.	0.514