STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Epg5Uncharacterized protein. (323 aa)    
Predicted Functional Partners:
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
      
 0.801
pdlim1
PDZ and LIM domain 1 (elfin).
      
 0.794
Tecpr2
Uncharacterized protein.
   
  
 0.732
ENSORLP00000036593
Uncharacterized protein.
   
  
 0.732
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.701
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
      
 0.660
snap29
Synaptosome associated protein 29.
      
 0.641
ei24
EI24 autophagy associated transmembrane protein.
      
 0.628
ppp1r36
Uncharacterized protein.
      
 0.573
atg3
Autophagy-related protein 3.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.