Epg5 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

Epg5

Uncharacterized protein. (323 aa)

Predicted Functional Partners:

GABARAPL2

0.942

gabarap

0.942

map1lc3a

0.940

map1lc3b

0.940

LOC101170049

0.920

map1lc3c

0.920

LOC101159112

0.920

rab7a

0.903

LOC101157689

0.903

LOC101165549

0.900

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Epg5	GABARAPL2	ENSORLP00000010819	ENSORLP00000038235	Uncharacterized protein.	GABA type A receptor associated protein like 2.	0.942
Epg5	LOC101157689	ENSORLP00000010819	ENSORLP00000027914	Uncharacterized protein.	RAB7a, member RAS oncogene family.	0.903
Epg5	LOC101159112	ENSORLP00000010819	ENSORLP00000033202	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 gamma, like.	0.920
Epg5	LOC101165549	ENSORLP00000010819	ENSORLP00000044143	Uncharacterized protein.	Si:dkey-13a21.4.	0.900
Epg5	LOC101170049	ENSORLP00000010819	ENSORLP00000014971	Uncharacterized protein.	Zgc:92606.	0.920
Epg5	gabarap	ENSORLP00000010819	ENSORLP00000041539	Uncharacterized protein.	GABA(A) receptor-associated protein b.	0.942
Epg5	map1lc3a	ENSORLP00000010819	ENSORLP00000026217	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 alpha.	0.940
Epg5	map1lc3b	ENSORLP00000010819	ENSORLP00000039408	Uncharacterized protein.	RNA-dependent DNA polymerase.	0.940
Epg5	map1lc3c	ENSORLP00000010819	ENSORLP00000024884	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 gamma.	0.920
Epg5	rab7a	ENSORLP00000010819	ENSORLP00000021124	Uncharacterized protein.	Uncharacterized protein.	0.903
GABARAPL2	Epg5	ENSORLP00000038235	ENSORLP00000010819	GABA type A receptor associated protein like 2.	Uncharacterized protein.	0.942
GABARAPL2	LOC101170049	ENSORLP00000038235	ENSORLP00000014971	GABA type A receptor associated protein like 2.	Zgc:92606.	0.908
GABARAPL2	gabarap	ENSORLP00000038235	ENSORLP00000041539	GABA type A receptor associated protein like 2.	GABA(A) receptor-associated protein b.	0.902
GABARAPL2	map1lc3a	ENSORLP00000038235	ENSORLP00000026217	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.727
GABARAPL2	map1lc3b	ENSORLP00000038235	ENSORLP00000039408	GABA type A receptor associated protein like 2.	RNA-dependent DNA polymerase.	0.727
GABARAPL2	map1lc3c	ENSORLP00000038235	ENSORLP00000024884	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 gamma.	0.574
LOC101157689	Epg5	ENSORLP00000027914	ENSORLP00000010819	RAB7a, member RAS oncogene family.	Uncharacterized protein.	0.903
LOC101157689	LOC101165549	ENSORLP00000027914	ENSORLP00000044143	RAB7a, member RAS oncogene family.	Si:dkey-13a21.4.	0.928
LOC101157689	rab7a	ENSORLP00000027914	ENSORLP00000021124	RAB7a, member RAS oncogene family.	Uncharacterized protein.	0.900
LOC101159112	Epg5	ENSORLP00000033202	ENSORLP00000010819	Microtubule-associated protein 1 light chain 3 gamma, like.	Uncharacterized protein.	0.920