STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
popdc2Popeye domain containing 2. (379 aa)    
Predicted Functional Partners:
LOC101168108
Potassium channel, subfamily K, member 2a; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
     
 0.923
kcnk2
Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
     
 0.923
bves
Blood vessel epicardial substance.
  
 
0.917
popdc3
Popeye domain containing 3.
  
  
 
0.905
tmem161a
Transmembrane protein 161A.
      
 0.548
tmem70
Transmembrane protein 70.
      
 0.530
rhbdd1
Rhomboid domain containing 1.
    
 
 0.526
klhl31
Kelch-like family member 31.
   
  
 0.519
pik3ip1
Phosphoinositide-3-kinase interacting protein 1.
      
 0.512
fbxl5
F-box and leucine-rich repeat protein 5.
      
 0.511
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.