LOC101166984 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101166984

O-acyltransferase. (502 aa)

Predicted Functional Partners:

dgat2

0.984

LOC101166733

0.975

mogat2

0.975

sdr16c5

0.926

cyp26a1

0.926

LOC101158747

0.922

LOC101162811

0.922

LOC105356312

0.922

LOC101170667

0.919

rdh10

0.919

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101158747	LOC101162811	ENSORLP00000010335	ENSORLP00000010341	LRAT domain-containing protein.	Lecithin retinol acyltransferase a.	0.903
LOC101158747	LOC101166984	ENSORLP00000010335	ENSORLP00000010826	LRAT domain-containing protein.	O-acyltransferase.	0.922
LOC101158747	LOC101170667	ENSORLP00000010335	ENSORLP00000000762	LRAT domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.927
LOC101158747	LOC105356312	ENSORLP00000010335	ENSORLP00000033337	LRAT domain-containing protein.	Lecithin retinol acyltransferase b, tandem duplicate 1.	0.902
LOC101158747	cyp26a1	ENSORLP00000010335	ENSORLP00000018194	LRAT domain-containing protein.	Cytochrome P450 26A1; Belongs to the cytochrome P450 family.	0.932
LOC101158747	rdh10	ENSORLP00000010335	ENSORLP00000010020	LRAT domain-containing protein.	Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.927
LOC101158747	sdr16c5	ENSORLP00000010335	ENSORLP00000005433	LRAT domain-containing protein.	Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.913
LOC101162811	LOC101158747	ENSORLP00000010341	ENSORLP00000010335	Lecithin retinol acyltransferase a.	LRAT domain-containing protein.	0.903
LOC101162811	LOC101166984	ENSORLP00000010341	ENSORLP00000010826	Lecithin retinol acyltransferase a.	O-acyltransferase.	0.922
LOC101162811	LOC101170667	ENSORLP00000010341	ENSORLP00000000762	Lecithin retinol acyltransferase a.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.927
LOC101162811	LOC105356312	ENSORLP00000010341	ENSORLP00000033337	Lecithin retinol acyltransferase a.	Lecithin retinol acyltransferase b, tandem duplicate 1.	0.902
LOC101162811	cyp26a1	ENSORLP00000010341	ENSORLP00000018194	Lecithin retinol acyltransferase a.	Cytochrome P450 26A1; Belongs to the cytochrome P450 family.	0.932
LOC101162811	rdh10	ENSORLP00000010341	ENSORLP00000010020	Lecithin retinol acyltransferase a.	Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.927
LOC101162811	sdr16c5	ENSORLP00000010341	ENSORLP00000005433	Lecithin retinol acyltransferase a.	Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.913
LOC101166733	LOC101166984	ENSORLP00000010150	ENSORLP00000010826	Monoacylglycerol O-acyltransferase 3b.	O-acyltransferase.	0.975
LOC101166733	dgat2	ENSORLP00000010150	ENSORLP00000015787	Monoacylglycerol O-acyltransferase 3b.	Diacylglycerol O-acyltransferase 2.	0.902
LOC101166733	mogat2	ENSORLP00000010150	ENSORLP00000015768	Monoacylglycerol O-acyltransferase 3b.	Monoacylglycerol O-acyltransferase 2.	0.903
LOC101166984	LOC101158747	ENSORLP00000010826	ENSORLP00000010335	O-acyltransferase.	LRAT domain-containing protein.	0.922
LOC101166984	LOC101162811	ENSORLP00000010826	ENSORLP00000010341	O-acyltransferase.	Lecithin retinol acyltransferase a.	0.922
LOC101166984	LOC101166733	ENSORLP00000010826	ENSORLP00000010150	O-acyltransferase.	Monoacylglycerol O-acyltransferase 3b.	0.975