STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170379Cytochrome c oxidase copper chaperone COX17. (65 aa)    
Predicted Functional Partners:
LOC101169354
CHCH domain-containing protein.
   
 0.938
H2MHB3_ORYLA
Uncharacterized protein.
   
 0.911
LOC101170668
Coiled-coil-helix-coiled-coil-helix domain containing 4b.
   
 0.911
LOC101159951
Cytochrome c oxidase assembly homolog 11 (yeast).
   
  
 0.843
pum1
Pumilio RNA-binding family member 1.
    
 
 0.792
pum2
Pumilio 2.
    
 
 0.792
gfer
Sulfhydryl oxidase.
   
 0.785
LOC101168000
Cytochrome C oxidase assembly factor 5.
   
  
 0.766
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
 
 0.750
PET117
PET117 cytochrome c oxidase chaperone.
   
  
 0.735
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.