LOC101173669 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101173669

ATP-binding cassette, sub-family D (ALD), member 2. (734 aa)

Predicted Functional Partners:

pex19

0.835

pex13

0.781

pex3

0.776

abcd3

0.771

pex14

0.738

pex12

0.721

pex16

0.718

abcd4

0.704

scp2

0.694

LOC101172485

0.694

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101172485	LOC101173669	ENSORLP00000041161	ENSORLP00000010831	Sterol carrier protein 2b.	ATP-binding cassette, sub-family D (ALD), member 2.	0.694
LOC101172485	abcd3	ENSORLP00000041161	ENSORLP00000004996	Sterol carrier protein 2b.	ATP-binding cassette, sub-family D (ALD), member 3a.	0.643
LOC101172485	abcd4	ENSORLP00000041161	ENSORLP00000021831	Sterol carrier protein 2b.	ATP-binding cassette, sub-family D (ALD), member 4.	0.643
LOC101172485	pex12	ENSORLP00000041161	ENSORLP00000021270	Sterol carrier protein 2b.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.968
LOC101172485	pex13	ENSORLP00000041161	ENSORLP00000001977	Sterol carrier protein 2b.	Peroxisomal biogenesis factor 13.	0.977
LOC101172485	pex14	ENSORLP00000041161	ENSORLP00000040827	Sterol carrier protein 2b.	Peroxisomal biogenesis factor 14.	0.968
LOC101172485	scp2	ENSORLP00000041161	ENSORLP00000013108	Sterol carrier protein 2b.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.878
LOC101173669	LOC101172485	ENSORLP00000010831	ENSORLP00000041161	ATP-binding cassette, sub-family D (ALD), member 2.	Sterol carrier protein 2b.	0.694
LOC101173669	abcd3	ENSORLP00000010831	ENSORLP00000004996	ATP-binding cassette, sub-family D (ALD), member 2.	ATP-binding cassette, sub-family D (ALD), member 3a.	0.771
LOC101173669	abcd4	ENSORLP00000010831	ENSORLP00000021831	ATP-binding cassette, sub-family D (ALD), member 2.	ATP-binding cassette, sub-family D (ALD), member 4.	0.704
LOC101173669	pex12	ENSORLP00000010831	ENSORLP00000021270	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.721
LOC101173669	pex13	ENSORLP00000010831	ENSORLP00000001977	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal biogenesis factor 13.	0.781
LOC101173669	pex14	ENSORLP00000010831	ENSORLP00000040827	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal biogenesis factor 14.	0.738
LOC101173669	pex16	ENSORLP00000010831	ENSORLP00000040677	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal membrane protein PEX16.	0.718
LOC101173669	pex19	ENSORLP00000010831	ENSORLP00000003681	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal biogenesis factor 19.	0.835
LOC101173669	pex3	ENSORLP00000010831	ENSORLP00000041529	ATP-binding cassette, sub-family D (ALD), member 2.	Peroxisomal biogenesis factor 3.	0.776
LOC101173669	scp2	ENSORLP00000010831	ENSORLP00000013108	ATP-binding cassette, sub-family D (ALD), member 2.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.694
abcd3	LOC101172485	ENSORLP00000004996	ENSORLP00000041161	ATP-binding cassette, sub-family D (ALD), member 3a.	Sterol carrier protein 2b.	0.643
abcd3	LOC101173669	ENSORLP00000004996	ENSORLP00000010831	ATP-binding cassette, sub-family D (ALD), member 3a.	ATP-binding cassette, sub-family D (ALD), member 2.	0.771
abcd3	pex12	ENSORLP00000004996	ENSORLP00000021270	ATP-binding cassette, sub-family D (ALD), member 3a.	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.	0.815