STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ell2Elongation factor, RNA polymerase II, 2. (655 aa)    
Predicted Functional Partners:
aff4
AF4/FMR2 family, member 4.
   
 0.956
eaf1
ELL associated factor 1.
    
 0.954
LOC101154988
ELL associated factor 2.
    
 0.896
LOC101169625
Uncharacterized protein.
   
 0.895
supt5h
Transcription elongation factor SPT5.
    
 0.854
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.848
ccnk
Cyclin K; Belongs to the cyclin family.
    
 0.821
LOC101157196
Cyclin T2b; Belongs to the cyclin family.
    
 0.817
ccnt1
Cyclin T1; Belongs to the cyclin family.
    
 0.817
ccnt2
Cyclin T2; Belongs to the cyclin family.
    
 0.817
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.