STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161218Calcium channel, voltage-dependent, gamma subunit 3a. (335 aa)    
Predicted Functional Partners:
ppp2ca
Serine/threonine-protein phosphatase.
     
  0.650
LOC101159840
RAS guanyl releasing protein 4.
     
  0.650
LOC101169945
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
     
  0.650
rasgrf2
Ras protein-specific guanine nucleotide-releasing factor 2b.
     
  0.650
LOC101167679
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
     
  0.650
ppp2r5b
Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit.
     
  0.650
LOC101171445
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
     
  0.650
ppp2r2d
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
     
  0.650
LOC101167061
Protein phosphatase 2, regulatory subunit A, beta b.
     
  0.650
PPP2R3B
Protein phosphatase 2 regulatory subunit B''beta.
     
  0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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