STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COMTD1Catechol-O-methyltransferase domain containing 1. (257 aa)    
Predicted Functional Partners:
dus2
Dihydrouridine synthase 2.
  
  
 0.792
LOC101168154
MAP6 domain containing 1.
    
 
 0.735
LOC101169100
GC-rich sequence DNA-binding factor 2.
      
 0.712
disp2
Dispatched homolog 2 (Drosophila).
      
 0.651
tk1
Thymidine kinase.
  
 
  0.640
LOC101159951
Cytochrome c oxidase assembly homolog 11 (yeast).
   
  
 0.633
mdn1
Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.
    
 
 0.633
stk11ip
Serine/threonine kinase 11 interacting protein.
    
   0.615
slc25a16
Solute carrier family 25 member 16; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.610
saal1
Serum amyloid A-like 1.
    
 
 0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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