Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc3bLeucine rich repeat containing 3B. (260 aa)    
Predicted Functional Partners:
stox1
Storkhead box 1.
      
 0.757
cbr4
Carbonyl reductase 4.
    
 
 0.605
mrvi1
Murine retrovirus integration site 1 homolog.
    
 0.541
lyve1
Link domain-containing protein.
    
 0.541
ENSORLP00000042479
Link domain-containing protein.
    
 0.541
LOC101168659
Dual specificity phosphatase 19a.
    
 
 0.517
LOC101164153
Immunoglobin superfamily, member 21b.
    
 0.517
LOC101169592
Dual specificity phosphatase 19b.
    
 
 0.517
ktn1
Kinectin 1.
    
 0.491
SYNDIG1
Synapse differentiation inducing 1.
      
 0.477
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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