STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf503Zinc finger protein 503. (561 aa)    
Predicted Functional Partners:
hif1an
Hypoxia inducible factor 1 subunit alpha inhibitor.
      
 0.571
barhl2
BarH-like homeobox 2.
   
  
 0.553
fign
Fidgetin; Belongs to the AAA ATPase family.
      
 0.531
igf2bp1
Insulin-like growth factor 2 mRNA binding protein 1.
      
 0.512
EBF1
EBF transcription factor 1.
      
 0.510
LOC101162817
AAA domain-containing protein.
      
 0.507
RNF220
Uncharacterized protein.
     
 0.506
LOC101158718
BAF chromatin remodeling complex subunit BCL11A.
   
 
 0.485
BCL11B
Uncharacterized protein.
   
 
 0.470
ndufb8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
      
 0.461
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.