STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tagln3Transgelin; Belongs to the calponin family. (221 aa)    
Predicted Functional Partners:
Wdr90
WD_REPEATS_REGION domain-containing protein.
    
 
 0.745
ENSORLP00000042816
Uncharacterized protein.
    
 
 0.745
Tmprss7
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
 
  
 
 0.649
pacrg
PARK2 co-regulated.
    
 
 0.646
gsx1
Developmental transcription factor.
   
  
 0.608
WDR1
WD repeat domain 1.
   
 
 0.608
shisa2
Shisa family member 2b.
      
 0.599
efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.595
efhc2
EF-hand domain (C-terminal) containing 2.
   
 
 0.595
wasf3
WASP family member 3b.
      
 0.589
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.