Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tagln3Transgelin; Belongs to the calponin family. (221 aa)    
Predicted Functional Partners:
H2MFT6_ORYLA
Uncharacterized protein.
    
 
 0.874
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.740
pacrg
PARK2 co-regulated.
    
 
 0.695
Tmprss7
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.689
Wdr90
WD_REPEATS_REGION domain-containing protein.
    
 
 0.668
ENSORLP00000042816
Uncharacterized protein.
    
 
 0.668
wasf3
WASP family member 3b.
    
 
 0.635
shisa2
Shisa family member 2b.
      
 0.635
H2MFS1_ORYLA
Uncharacterized protein.
    
 
 0.627
Ak9
Uncharacterized protein.
    
 
 0.627
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.