Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154795Homeobox domain-containing protein. (296 aa)    
Predicted Functional Partners:
LOC101162549
Prominin 2.
      
 0.787
LOC101157197
Prominin 1a.
      
 0.787
znf366
Zinc finger protein 366.
   
 
 0.717
gbx2
Gastrulation brain homeobox 2.
    
 0.690
LOC101169019
Orthodenticle homeobox 2a.
   
  
 0.664
LOC101163925
Orthodenticle homeobox 1.
   
  
 0.664
LOC101156064
Prominin 1 b.
      
 0.652
LOC100049520
POU domain protein.
   
 0.612
aanat2
Arylalkylamine N-acetyltransferase 2.
      
 0.610
hhex
Homeobox domain-containing protein.
   
  
 0.610
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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