Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl48Mitochondrial ribosomal protein L48. (202 aa)    
Predicted Functional Partners:
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.988
mrps30
Mitochondrial ribosomal protein S30.
   
 
 0.983
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.983
mrpl51
Mitochondrial ribosomal protein L51.
   
 
 0.983
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.978
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.973
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.972
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.971
mrpl52
Mitochondrial ribosomal protein L52.
   
 
 0.970
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.961
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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