STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrpl48Mitochondrial ribosomal protein L48. (202 aa)    
Predicted Functional Partners:
mrpl51
Mitochondrial ribosomal protein L51.
   
 
 0.983
MRPL49
Mitochondrial ribosomal protein L49.
    
 
 0.980
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.977
mrps22
Mitochondrial ribosomal protein S22.
   
 
 0.945
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.935
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.934
mrps18b
Mitochondrial ribosomal protein S18B.
   
 
 0.929
dap3
Death associated protein 3.
   
 
 0.925
mrps33
Mitochondrial ribosomal protein S33.
   
 
 0.921
mrpl45
Mitochondrial ribosomal protein L45.
   
 
 0.919
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.