STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158764Transketolase b. (626 aa)    
Predicted Functional Partners:
taldo1
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 0.994
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.984
LOC101173933
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.982
gpi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.982
rpia
Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase).
   
 0.977
LOC101160795
Fructose-1,6-bisphosphatase 2; Belongs to the FBPase class 1 family.
  
 
 0.971
LOC101156992
Fructose-bisphosphatase 1; Belongs to the FBPase class 1 family.
  
 
 0.971
LOC101167730
Glyceraldehyde-3-phosphate dehydrogenase.
  
 0.957
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
  
 0.957
LOC100049273
Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.
  
 0.955
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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