Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101166708NPHS2 stomatin family member, podocin. (356 aa)    
Predicted Functional Partners:
nphs1
NPHS1 adhesion molecule, nephrin.
   
 0.936
LOC101165777
Podocalyxin-like.
    
 0.811
cd2ap
CD2-associated protein.
   
 
 0.810
plce1
Phospholipase C, epsilon 1.
      
 0.808
wt1-2
Uncharacterized protein.
    
 0.754
ENSORLP00000037521
Centrosomal protein 350.
   
 
 0.712
tor3a
Torsin family 3, member A.
      
 0.706
wt1
Uncharacterized protein.
    
 0.699
sh3kbp1
SH3-domain kinase binding protein 1.
   
 
 0.675
sh3d21
SH3 domain containing 21.
   
 
 0.675
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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