STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166708NPHS2 stomatin family member, podocin. (356 aa)    
Predicted Functional Partners:
fat1
FAT atypical cadherin 1a.
    
 
 0.740
nphs1
NPHS1 adhesion molecule, nephrin.
    
 0.712
LOC101165777
Podocalyxin-like.
    
 0.701
cd2ap
CD2-associated protein.
   
 
 0.679
LOC101160233
Tight junction protein 1b; Belongs to the MAGUK family.
     
 0.669
LOC101166369
Tight junction protein 1a; Belongs to the MAGUK family.
     
 0.669
wt1-2
Uncharacterized protein.
    
 0.655
LOC101157690
Si:ch1073-174d20.2.
   
 0.645
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
   
 0.645
afg3l2
AFG3-like AAA ATPase 2.
   
 0.645
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.