Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
rrp12Ribosomal RNA processing 12 homolog. (1288 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
   
 
 0.998
tsr1
TSR1 ribosome maturation factor.
   
 
 0.997
nat10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.994
LOC101167684
PWP2 small subunit processome component.
   
 
 0.992
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.989
H2MCJ8_ORYLA
Programmed cell death 11.
   
 
 0.988
nop14
NOP14 nucleolar protein homolog (yeast).
   
 
 0.987
noc4l
Nucleolar complex associated 4 homolog.
   
 
 0.987
cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.987
rbm28
RNA binding motif protein 28.
   
 
 0.981
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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