tmem245 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tmem245

Transmembrane protein 245. (868 aa)

Predicted Functional Partners:

sra1

0.738

USP34

0.604

gabpb2

0.579

LOC101172197

0.561

terf2ip

0.561

ctnnal1

0.526

ENSORLP00000035938

0.520

Gtf3c1

0.499

ENSORLP00000033933

0.499

eif2b1

0.498

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000033933	Gtf3c1	ENSORLP00000033933	ENSORLP00000012472	B-block_TFIIIC domain-containing protein.	Uncharacterized protein.	0.944
ENSORLP00000033933	gabpb2	ENSORLP00000033933	ENSORLP00000001632	B-block_TFIIIC domain-containing protein.	GA binding protein transcription factor subunit beta 2a.	0.400
ENSORLP00000033933	tmem245	ENSORLP00000033933	ENSORLP00000010929	B-block_TFIIIC domain-containing protein.	Transmembrane protein 245.	0.499
ENSORLP00000035938	LOC101172197	ENSORLP00000035938	ENSORLP00000026375	Uncharacterized protein.	TERF1 (TRF1)-interacting nuclear factor 2.	0.999
ENSORLP00000035938	terf2ip	ENSORLP00000035938	ENSORLP00000026778	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSORLP00000035938	tmem245	ENSORLP00000035938	ENSORLP00000010929	Uncharacterized protein.	Transmembrane protein 245.	0.520
Gtf3c1	ENSORLP00000033933	ENSORLP00000012472	ENSORLP00000033933	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.944
Gtf3c1	gabpb2	ENSORLP00000012472	ENSORLP00000001632	Uncharacterized protein.	GA binding protein transcription factor subunit beta 2a.	0.400
Gtf3c1	tmem245	ENSORLP00000012472	ENSORLP00000010929	Uncharacterized protein.	Transmembrane protein 245.	0.499
LOC101172197	ENSORLP00000035938	ENSORLP00000026375	ENSORLP00000035938	TERF1 (TRF1)-interacting nuclear factor 2.	Uncharacterized protein.	0.999
LOC101172197	terf2ip	ENSORLP00000026375	ENSORLP00000026778	TERF1 (TRF1)-interacting nuclear factor 2.	Uncharacterized protein.	0.999
LOC101172197	tmem245	ENSORLP00000026375	ENSORLP00000010929	TERF1 (TRF1)-interacting nuclear factor 2.	Transmembrane protein 245.	0.561
USP34	tmem245	ENSORLP00000002000	ENSORLP00000010929	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	Transmembrane protein 245.	0.604
ctnnal1	tmem245	ENSORLP00000033262	ENSORLP00000010929	Catenin (cadherin-associated protein), alpha-like 1.	Transmembrane protein 245.	0.526
eif2b1	gabpb2	ENSORLP00000000520	ENSORLP00000001632	Eukaryotic translation initiation factor 2B, subunit 1 alpha; Belongs to the eIF-2B alpha/beta/delta subunits family.	GA binding protein transcription factor subunit beta 2a.	0.415
eif2b1	tmem245	ENSORLP00000000520	ENSORLP00000010929	Eukaryotic translation initiation factor 2B, subunit 1 alpha; Belongs to the eIF-2B alpha/beta/delta subunits family.	Transmembrane protein 245.	0.498
gabpb2	ENSORLP00000033933	ENSORLP00000001632	ENSORLP00000033933	GA binding protein transcription factor subunit beta 2a.	B-block_TFIIIC domain-containing protein.	0.400
gabpb2	Gtf3c1	ENSORLP00000001632	ENSORLP00000012472	GA binding protein transcription factor subunit beta 2a.	Uncharacterized protein.	0.400
gabpb2	eif2b1	ENSORLP00000001632	ENSORLP00000000520	GA binding protein transcription factor subunit beta 2a.	Eukaryotic translation initiation factor 2B, subunit 1 alpha; Belongs to the eIF-2B alpha/beta/delta subunits family.	0.415
gabpb2	tmem245	ENSORLP00000001632	ENSORLP00000010929	GA binding protein transcription factor subunit beta 2a.	Transmembrane protein 245.	0.579