STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bgnBiglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (372 aa)    
Predicted Functional Partners:
fmod
Fibromodulin a.
  
 
0.764
lum
Lumican.
  
 
0.757
ogn
Osteoglycin, paralog a.
   
 
0.745
prelp
Proline/arginine-rich end leucine-rich repeat protein.
  
 
0.674
kera
Keratocan.
  
 
0.665
LOC101165132
Uncharacterized protein.
   
 
 0.601
LOC101156813
Aggrecan b.
   
 
 0.601
hspg2
Heparan sulfate proteoglycan 2.
   
 0.596
ENSORLP00000028654
SUEL-type lectin domain-containing protein.
    
   0.590
ENSORLP00000034371
SUEL-type lectin domain-containing protein.
    
   0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.