Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
bgnBiglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily. (372 aa)    
Predicted Functional Partners:
ogn
Osteoglycin, paralog a.
   
 
0.770
lum
Lumican.
  
 
0.734
prelp
Proline/arginine-rich end leucine-rich repeat protein.
  
 
0.731
fmod
Fibromodulin a.
  
 
0.724
hspg2
Heparan sulfate proteoglycan 2.
   
 0.701
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.694
kera
Keratocan.
  
 
0.679
csgalnact2
Hexosyltransferase.
    
 0.672
lrr1
Zgc:77287.
  
   
 0.645
LOC101165132
Uncharacterized protein.
    
 0.637
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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