Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
frrs1lFerric-chelate reductase 1-like. (284 aa)    
Predicted Functional Partners:
mrpl23
Mitochondrial ribosomal protein L23.
   
 
 0.791
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.773
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.757
mrpl27
Mitochondrial ribosomal protein L27.
   
 
 0.756
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.753
mrps35
Mitochondrial ribosomal protein S35.
   
 
 0.739
mrps16
Mitochondrial ribosomal protein S16.
   
 
 0.738
mrpl41
Uncharacterized protein.
   
 
 0.737
mrpl4
Mitochondrial ribosomal protein L4.
   
 
 0.732
mrpl11
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.726
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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