STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crb1Crumbs cell polarity complex component 1. (1325 aa)    
Predicted Functional Partners:
mpp5
Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.
    
 0.687
MPP5
Membrane palmitoylated protein 5; Belongs to the MAGUK family.
    
 0.687
aspm
Abnormal spindle microtubule assembly.
      
 0.605
LOC101175097
Dachsous cadherin-related 1a.
    
 0.496
fkbpl
TPR_REGION domain-containing protein.
    
 0.474
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 
 0.464
cfp
Uncharacterized protein.
   
 0.463
LOC101175325
Uncharacterized protein.
    
 
 0.451
H2MS57_ORYLA
CD109 molecule.
     
 0.450
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.