STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173781Tetraspanin. (236 aa)    
Predicted Functional Partners:
LOC101162281
Immunoglobulin superfamily, member 8.
    
 
 0.948
CD9
Tetraspanin.
  
  
 
0.903
LOC101159268
Tetraspanin.
     
 
0.900
ENSORLP00000028318
Ig-like domain-containing protein.
    
 
 0.858
ptgfrn
Uncharacterized protein.
    
 
 0.858
cd63
Tetraspanin.
   
 
 0.832
itga3
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
   
 0.824
LOC101159348
Link domain-containing protein.
   
 
 0.796
LOC101154978
Integrin beta; Belongs to the integrin beta chain family.
   
 0.765
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.761
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.