STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DXODecapping exoribonuclease. (422 aa)    
Predicted Functional Partners:
xrn2
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
 
 0.994
exosc7
Exosome component 7.
   
   0.964
recql5
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
   0.939
rpap2
RNA polymerase II associated protein 2.
   
   0.925
exosc4
Exosome component 4.
   
 
 0.913
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 
 0.850
rprd1b
Regulation of nuclear pre-mRNA domain containing 1B.
    
 
 0.792
rprd1a
Regulation of nuclear pre-mRNA domain containing 1A.
    
 
 0.792
fbf1
Uncharacterized protein.
    
 
 0.792
nelfe
Negative elongation factor complex member E.
   
 
 0.790
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.