STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stk19Serine/threonine kinase 19. (254 aa)    
Predicted Functional Partners:
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
  
 0.746
DXO
Decapping exoribonuclease.
   
  
 0.709
gpatch11
G patch domain containing 11.
      
 0.693
uvssa
UV-stimulated scaffold protein A.
    
 
 0.665
ddb1
Damage-specific DNA binding protein 1.
    
   0.650
H2LC37_ORYLA
Uncharacterized protein.
    
   0.650
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
   0.650
ercc8
Excision repair cross-complementation group 8.
    
   0.650
polr2d
Polymerase (RNA) II (DNA directed) polypeptide D.
    
   0.650
polr2i
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
   0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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