Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lhx9LIM homeobox 9. (399 aa)    
Predicted Functional Partners:
slc39a7
Solute carrier family 39 member 7.
      
 0.880
LOC101162780
LIM domain binding 1a.
    
 0.730
ldb2
LIM domain binding 2a.
    
 0.730
LOC101158085
LIM-domain binding 1b.
    
 0.730
LOC101162198
LIM domain only 1.
   
 
 0.660
lmo3
LIM domain only 3.
   
 
 0.660
RXRB
Uncharacterized protein.
    
 
 0.647
khk
Ketohexokinase.
    
   0.627
gata4
GATA binding protein 4.
    
 0.627
vwa8
Von Willebrand factor A domain containing 8.
    
 
 0.622
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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