Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174784Uncharacterized protein. (822 aa)    
Predicted Functional Partners:
slc1a1
Amino acid transporter.
  
 
 0.610
LOC101163600
Uncharacterized protein.
    
 
 0.583
slc30a5
Solute carrier family 30 member 5.
  
 0.557
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
      
 0.548
mettl9
Methyltransferase like 9.
    
 
 0.545
znf644
Zinc finger protein 644a.
      
 0.496
LOC101161644
Ring finger protein 165b.
      
 0.494
slc30a3
Solute carrier family 30 member 2.
    
 
 0.486
SLC39A3
Solute carrier family 39 member 3.
   
 0.476
slc39a1
Solute carrier family 39 member 1.
   
 0.476
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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