Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101160364Si:ch211-140b10.6. (146 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.618
cebpz
CCAAT enhancer binding protein zeta.
   
  
 0.587
polr1e
RNA polymerase I subunit E.
   
  
 0.581
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.557
nat9
N-acetyltransferase 9 (GCN5-related, putative).
      
 0.541
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
   
 0.540
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.513
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
  
 0.503
pold1
DNA polymerase.
    
 0.502
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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