STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157282CCCTC-binding factor (zinc finger protein). (753 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.887
rad21
Uncharacterized protein.
   
 0.814
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
    
 
 0.775
LOC101158611
VEFS-Box domain-containing protein.
   
 0.759
suz12
SUZ12 polycomb repressive complex 2 subunit b.
   
 0.759
LOC101158550
Nucleophosmin 1a.
    
 0.732
ercc4
Excision repair cross-complementation group 4.
     
 0.690
LOC101173147
RAD21 cohesin complex component like 1.
   
 0.689
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.687
brca2
BRCA2 DNA repair associated.
      
 0.687
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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