STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157282CCCTC-binding factor (zinc finger protein). (753 aa)    
Predicted Functional Partners:
rad21
Uncharacterized protein.
   
 0.909
smc3
Structural maintenance of chromosomes protein.
   
 0.794
LOC101173147
RAD21 cohesin complex component like 1.
   
 0.744
zbtb33
Zinc finger and BTB domain containing 33.
    
 
 0.699
LOC101160197
E1A binding protein p300 a.
   
 0.601
wapl
WAPL cohesin release factor a.
   
  
 0.594
med12
Mediator complex subunit 12.
   
 0.588
wrap53
WD repeat containing, antisense to TP53.
     
 0.581
LOC101168870
E1A binding protein p300 b.
   
 0.578
maml2
MamL-1 domain-containing protein.
    
 0.572
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.