STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154876Cyclic nucleotide-binding domain-containing protein. (703 aa)    
Predicted Functional Partners:
LOC101156692
Cyclic nucleotide gated channel beta 3, tandem duplicate 1.
  
0.867
LOC101156926
Cyclic nucleotide gated channel beta 3, tandem duplicate 2.
  
0.867
LOC101157535
Si:dkey-44k1.5.
  
0.863
ENSORLP00000031918
Cyclic nucleotide gated channel beta 1a.
  
0.861
LOC101162405
Cyclic nucleotide gated channel subunit alpha 4.
  
  
0.754
cnga3
Cyclic nucleotide gated channel subunit alpha 3a.
  
  
0.559
LOC101170498
Cyclic nucleotide-binding domain-containing protein.
  
  
 
0.555
LOC101174653
Cyclic nucleotide gated channel subunit alpha 1b.
  
  
0.553
ENSORLP00000043644
Cyclic nucleotide gated channel subunit alpha 1a.
  
  
 
0.552
cnga2
Cyclic nucleotide gated channel alpha 2b.
  
  
 
0.548
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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