STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pxylp12-phosphoxylose phosphatase 1; Belongs to the histidine acid phosphatase family. (530 aa)    
Predicted Functional Partners:
fam20b
FAM20B glycosaminoglycan xylosylkinase.
      
 0.765
xylt2
Protein-O-xylosyltransferase II.
      
 0.609
tmem196
Uncharacterized protein.
      
 0.607
extl2
Exostosin-like glycosyltransferase 2.
      
 0.598
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
      
 0.598
ushbp1
Usher syndrome 1C binding protein 1.
      
 0.597
LOC110015536
Homeobox B3a.
      
 0.570
ap5m1
Adaptor related protein complex 5 subunit mu 1; Belongs to the adaptor complexes medium subunit family.
      
 0.522
ext2
Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.
      
 0.501
LOC101160491
Glypican 4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
     
 0.493
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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