Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gabpaGA binding protein transcription factor subunit alpha. (440 aa)    
Predicted Functional Partners:
gabpb2
GA binding protein transcription factor subunit beta 2a.
    
 0.998
atp5pf
ATP synthase-coupling factor 6, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain; Belongs to the eukaryotic ATPase subunit F6 family.
      
 0.914
tpd52l2
Uncharacterized protein.
    
   0.899
LOC101160197
E1A binding protein p300 a.
   
 
 0.789
LOC101168870
E1A binding protein p300 b.
   
 
 0.789
tfam
Transcription factor A, mitochondrial.
   
 
 0.760
shbg
Sex hormone-binding globulin.
      
 0.752
LOC101174594
Tpd52 like 2a.
    
   0.715
LOC101163392
CREB binding protein a.
   
 
 0.696
nrf1
Nuclear respiratory factor 1.
   
 
 0.649
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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