Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
H2LYC2_ORYLAFibrinogen-like 1. (323 aa)    
Predicted Functional Partners:
tube1
Tubulin, epsilon 1; Belongs to the tubulin family.
    
   0.703
APOH
Uncharacterized protein.
   
 0.702
APOH-2
Apolipoprotein H.
   
 0.702
ethe1
ETHE1 persulfide dioxygenase.
    
   0.670
lag3
Uncharacterized protein.
    
 
 0.594
mtpn
ANK_REP_REGION domain-containing protein.
    
 
 0.534
fga
Fibrinogen alpha chain.
   
  
 0.508
ogfod1
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
    
   0.504
LOC101162464
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.501
LOC101160932
Uncoupling protein 3; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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