Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tmx1Thioredoxin-related transmembrane protein 1. (412 aa)    
Predicted Functional Partners:
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.746
LOC101157158
Thioredoxin domain-containing protein.
   
 
 0.713
TMX3
Thioredoxin related transmembrane protein 3.
   
 
 0.713
LOC101165899
Uncharacterized protein.
    
   0.702
tmx2
Thioredoxin-related transmembrane protein 2a.
    
 
 0.697
TMX2
Thioredoxin domain-containing protein.
    
 
 0.697
trmt1l
tRNA (guanine(26)-N(2))-dimethyltransferase.
      
 0.691
ccdc90b
Coiled-coil domain containing 90B.
      
 0.671
ndufb11
NADH:ubiquinone oxidoreductase subunit B11.
   
 
 0.668
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.654
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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