STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gfod2Glucose-fructose oxidoreductase domain containing 2. (399 aa)    
Predicted Functional Partners:
tgds
NAD(P)-bd_dom domain-containing protein.
  
 
 0.676
rgn
Regucalcin.
  
 
 0.658
kars1
Lysine--tRNA ligase.
  
    0.600
sord
Sorbitol dehydrogenase.
  
 
 0.576
galk2
Galactokinase 2.
  
 
 0.560
galk1
Galactokinase 1.
  
 
 0.560
nmnat3
Nicotinamide-nucleotide adenylyltransferase.
   
 
 0.508
LOC101174424-2
Nicotinamide-nucleotide adenylyltransferase.
   
 
 0.508
cpox
Coproporphyrinogen oxidase.
   
 
 0.492
tmem254
Uncharacterized protein.
   
 
 0.486
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.