STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf6Ring finger protein (C3H2C3 type) 6. (719 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.818
ubc
Ubiquitin B.
    
 0.787
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.719
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
 0.719
LOC101164071
Zgc:66447.
    
 
 0.692
mkln1
Muskelin 1, intracellular mediator containing kelch motifs.
   
  
 0.690
LOC101170165
Mothers against decapentaplegic homolog.
   
 0.680
smad6
Mothers against decapentaplegic homolog.
   
 0.680
clvs2
Clavesin 2.
      
 0.680
smad7
Mothers against decapentaplegic homolog.
   
 0.680
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.