STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx25Sorting nexin 25. (1005 aa)    
Predicted Functional Partners:
mrs2
Magnesium transporter.
      
 0.678
macrod2
Macro domain-containing protein.
      
 0.678
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
      
 0.677
mdm1
Uncharacterized protein.
      
 0.487
LOC101169255
Uncharacterized protein.
   
 
0.473
SNX14
Sorting nexin 14.
   
 
0.473
dcxr
Dicarbonyl/L-xylulose reductase.
      
 0.444
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
      
 0.414
pms1
PMS1 homolog 1, mismatch repair system component.
   
  
 0.413
LOC101158035
RAB33A, member RAS oncogene family.
     
 0.408
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.