Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snx25Sorting nexin 25. (1005 aa)    
Predicted Functional Partners:
LOC101158035
RAB33A, member RAS oncogene family.
      
 0.684
ccdc177
Uncharacterized protein.
     
 0.632
LOC101164427
Uncharacterized protein.
     
 0.632
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
      
 0.609
rnmt
mRNA cap guanine-N7 methyltransferase.
      
 0.574
LOC101169255
Uncharacterized protein.
   
 
 0.525
SNX14
Sorting nexin 14.
   
 
 0.525
pms1
PMS1 homolog 1, mismatch repair system component.
   
  
 0.518
LOC101169625
Uncharacterized protein.
   
 
 0.500
snx15
Sorting nexin 15.
    
 0.497
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.