STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162428Endoplasmic reticulum to nucleus signaling 2. (963 aa)    
Predicted Functional Partners:
xbp1
X-box binding protein 1.
    
 0.977
LOC101155367
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.953
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.953
LOC101167626
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.953
LOC101167985
Si:ch211-1i11.3.
    
0.948
map3k5
Mitogen-activated protein kinase kinase kinase 5.
    
 0.948
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
    
 0.927
ern1
Uncharacterized protein.
  
  
 
0.902
LOC111949269
Uncharacterized protein.
     
 
0.900
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.765
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.