STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LYT8_ORYLAUncharacterized protein. (1539 aa)    
Predicted Functional Partners:
ENSORLP00000036346
Uncharacterized protein.
 
   
 0.911
Wdfy4
WD_REPEATS_REGION domain-containing protein.
 
    
 0.910
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.694
rack1
Receptor for activated C kinase 1.
    
 0.633
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.590
rccd1
RCC1 domain containing 1.
   
 
 0.574
tbc1d16
TBC1 domain family, member 16.
      
 0.560
wdfy1
WD repeat and FYVE domain containing 1.
   
  
 0.560
LOC101161446
WD repeat and FYVE domain containing 2.
   
  
 0.560
H2L8H4_ORYLA
Sorting nexin 22.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.