Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165998Dorsal root ganglia homeobox. (203 aa)    
Predicted Functional Partners:
ALX3
ALX homeobox 3.
   
  
 0.908
arx
Uncharacterized protein.
   
    0.901
OTP
Orthopedia homeobox b.
   
  
 0.768
OTP-2
Orthopedia homeobox.
   
  
 0.768
LOC101173296
Matrin-type domain-containing protein.
      
 0.761
uncx
UNC homeobox.
   
  
0.720
LOC101169335
Unc4.1 homeobox (C. elegans).
   
  
 0.671
ENSORLP00000045951
Uncharacterized protein.
   
  
 0.606
LOC101172495
Scratch family zinc finger 2.
      
 0.601
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
   0.600
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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