STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LYW2_ORYLAE2F_TDP domain-containing protein. (92 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
  
 0.876
rbl1
Retinoblastoma-like 1 (p107).
   
 0.780
rb1
Retinoblastoma 1.
   
 0.780
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.744
lin54
Lin-54 DREAM MuvB core complex component.
   
 0.670
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
    
 0.642
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.626
ccne2
Cyclin E2; Belongs to the cyclin family.
    
 0.623
ccne1
Cyclin E1; Belongs to the cyclin family.
    
 0.623
ccna1
Cyclin A1; Belongs to the cyclin family.
   
 0.545
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.