Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100049426Zgc:66475. (558 aa)    
Predicted Functional Partners:
timeless
Timeless circadian clock.
    
 0.757
LOC101174986
Cryptochrome circadian regulator 5.
      
 0.734
per1
Period homolog 1.
   
 0.733
LOC101161338
Period circadian clock 2.
   
 0.721
PER2
Period circadian regulator 2.
   
 0.720
LOC101159817
Period circadian clock 3.
   
 0.720
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.646
LOC101174183
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.646
LOC101159313
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.642
arnt
Aryl hydrocarbon receptor nuclear translocator.
   
 0.634
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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