STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163175Homer scaffold protein 1b. (359 aa)    
Predicted Functional Partners:
grm1
Glutamate receptor, metabotropic 1a.
    
 0.961
LOC101161005
WH1 domain-containing protein.
    
0.868
LOC101173805
Glutamate receptor, metabotropic 5a.
    
 0.632
grm5
Glutamate receptor, metabotropic 5b.
    
 0.632
LOC101157602
Dickkopf WNT signaling pathway inhibitor 3a.
      
 0.563
LOC101173517
Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.
      
 0.558
ENSORLP00000035838
FERM_f0 domain-containing protein.
    
 0.528
LOC101167744
Uncharacterized protein.
    
 0.483
LOC101163492
Uncharacterized protein.
    
   0.483
LOC101172375
Uncharacterized protein.
    
 0.483
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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