STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163175Homer scaffold protein 1b. (359 aa)    
Predicted Functional Partners:
grm1
Glutamate receptor, metabotropic 1a.
    
 0.987
LOC101161005
WH1 domain-containing protein.
    
 0.947
LOC101173805
Glutamate receptor, metabotropic 5a.
    
 0.879
grm5
Glutamate receptor, metabotropic 5b.
    
 0.879
LOC101167744
Uncharacterized protein.
    
 0.753
LOC101172375
Uncharacterized protein.
    
 0.753
shank3
SH3 and multiple ankyrin repeat domains 3a.
    
 0.753
LOC101165307
SH3 and multiple ankyrin repeat domains 1.
    
 0.753
LOC101163492
Uncharacterized protein.
    
   0.744
LOC101164472
Uncharacterized protein.
    
   0.744
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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